Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THYM | rs1028599 | chr2:32958132 | C/T | 8.22E-13 | 113 | 0.9 | 26.57 | 48 | KM Plot |
THYM | rs10515940 | chr2:201558699 | G/T | 3.38E-6 | 113 | 38.58 | 46.27 | 42.2 | KM Plot |
THYM | rs10779594 | chr1:213060906 | C/G | 2.23E-7 | 113 | 42.33 | 42.73 | 20.85 | KM Plot |
THYM | rs10810373 | chr9:15293620 | C/T | 3.31E-5 | 113 | 49.6 | 35.67 | 35 | KM Plot |
THYM | rs10916204 | chr1:227955318 | T/C | 7.14E-6 | 113 | 42.25 | 40.67 | 14.1 | KM Plot |
THYM | rs10952935 | chr7:76139395 | C/T | 2.35E-5 | 113 | 40.67 | 45.87 | 25.83 | KM Plot |
THYM | rs10952936 | chr7:76139453 | C/T | 2.35E-5 | 113 | 40.67 | 45.87 | 25.83 | KM Plot |
THYM | rs10961964 | chr9:15295482 | T/C | 2.48E-5 | 110 | 49.6 | 37.13 | 36.57 | KM Plot |
THYM | rs11131186 | chr3:9836312 | C/G | 3.53E-5 | 111 | 40.67 | 50.1 | 35 | KM Plot |
THYM | rs11131187 | chr3:9836386 | G/A | 3.53E-5 | 111 | 40.67 | 50.1 | 35 | KM Plot |
THYM | rs1115600 | chr20:37202173 | T/G | 4.24E-5 | 110 | 22.9 | 34.87 | 46.07 | KM Plot |
THYM | rs111770942 | chr2:73725638 | T/TTG | 8.91E-5 | 108 | 37.13 | 43.82 | 32.7 | KM Plot |
THYM | rs11211110 | chr1:45904815 | C/T | 8.18E-13 | 113 | 6.5 | 37 | 42.73 | KM Plot |
THYM | rs11213670 | chr11:110820881 | G/A | 8.56E-5 | 111 | 44.3 | 29.93 | 21.43 | KM Plot |
THYM | rs112158882 | chr7:76138796 | C/CAA | 2.35E-5 | 113 | 40.67 | 45.87 | 25.83 | KM Plot |